PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000130686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 226aa    MW: 25560 Da    PI: 9.3949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000130686genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.22.8e-48141381128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrF+Ptdeelv +yL+ kv + +l++ ++i+e++++ ++PwdLp +    e+e yfFs++++ky++g+r+nr+t+sgyWkatg dk+++s+ 
  MDP0000130686  14 LPPGFRFQPTDEELVFQYLRCKVFSCPLPA-SIIPEINVCMYDPWDLPGN---LEQERYFFSNKESKYRNGNRANRVTSSGYWKATGADKKIVSSr 105
                    79****************************.89***************54...46799**********************************9986 PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++ vg kktLvfy+g++p+ +ktdWvmhey l
  MDP0000130686 106 RNHIVGKKKTLVFYRGKSPHVSKTDWVMHEYCL 138
                    7778***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-568168IPR003441NAC domain
PROSITE profilePS5100553.80514168IPR003441NAC domain
PfamPF023653.5E-2515138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDKFKFVRNG MIRLPPGFRF QPTDEELVFQ YLRCKVFSCP LPASIIPEIN VCMYDPWDLP  60
GNLEQERYFF SNKESKYRNG NRANRVTSSG YWKATGADKK IVSSRRNHIV GKKKTLVFYR  120
GKSPHVSKTD WVMHEYCLVN AETTASIHAT ENALTPKGNW VLCRVFSKKR SGKMNEEIVV  180
NYNSIKVNNN ANPASSSSSC SSSSGITEVT SPSEECGEEI SSCPKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-441217315170NAC domain-containing protein 19
4dul_A1e-441217315170NAC domain-containing protein 19
1ut7_B1e-441217315170NO APICAL MERISTEM PROTEIN
1ut7_A1e-441217315170NO APICAL MERISTEM PROTEIN
1ut4_B1e-441217315170NO APICAL MERISTEM PROTEIN
1ut4_A1e-441217315170NO APICAL MERISTEM PROTEIN
3swp_D1e-441217318173NAC domain-containing protein 19
3swp_C1e-441217318173NAC domain-containing protein 19
3swp_B1e-441217318173NAC domain-containing protein 19
3swp_A1e-441217318173NAC domain-containing protein 19
3swm_D1e-441217318173NAC domain-containing protein 19
3swm_C1e-441217318173NAC domain-containing protein 19
3swm_B1e-441217318173NAC domain-containing protein 19
3swm_A1e-441217318173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374203.11e-169PREDICTED: NAC transcription factor 25-like
SwissprotQ9FY938e-82NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM5WSR91e-126M5WSR9_PRUPE; Uncharacterized protein
STRINGGLYMA18G53954.17e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-82NAC domain containing protein 83